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  5. Zm00001e025376_P003

Zm00001e025376_P003 (Zm00001e025376)


Aliases : Zm00001e025376

Description : NOB1 pre-rRNA processing endonuclease involved in ITS1 rRNA removal. endonuclease (NOB1)


Gene families : OG0006353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025376_P003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00064100 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
AT5G41190 No alias CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)... 0.05 OrthoFinder output from all 47 species
Aev_g14587 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Als_g00927 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Aob_g07913 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Azfi_s0501.g073867 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Cre01.g031750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dac_g28114 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g15039 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g32686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019776001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_33378 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.05 OrthoFinder output from all 47 species
LOC_Os02g02360.1 LOC_Os02g02360 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.06 OrthoFinder output from all 47 species
MA_10204983g0010 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.02 OrthoFinder output from all 47 species
Mp1g16460.1 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.04 OrthoFinder output from all 47 species
Pir_g20042 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0180.g024790 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Smo417184 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc08g007990.3.1 Solyc08g007990 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 71 157
IPR014881 NOB1_Zn-bd 435 505
No external refs found!