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  5. Zm00001e025223_P001

Zm00001e025223_P001 (RPN1A, ATRPN1A, Zm00001e025223)


Aliases : RPN1A, ATRPN1A, Zm00001e025223

Description : regulatory component RPN1 of 26S proteasome


Gene families : OG0003700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003700_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025223_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242820 RPN1A, ATRPN1A,... Protein degradation.26S proteasome.regulatory... 0.07 OrthoFinder output from all 47 species
AT2G20580 RPN1A, ATRPN1A 26S proteasome regulatory subunit S2 1A 0.06 OrthoFinder output from all 47 species
AT4G28470 RPN1B, ATRPN1B 26S proteasome regulatory subunit S2 1B 0.06 OrthoFinder output from all 47 species
Adi_g022424 RPN1A, ATRPN1A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055914 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ala_g02514 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Aop_g10255 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene22818.t1 RPN1A, ATRPN1A,... regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g59194 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ceric.33G015600.1 RPN1A, ATRPN1A,... regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.10 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.9 No alias 26S proteasome non-ATPase regulatory subunit 2 homolog A... 0.03 OrthoFinder output from all 47 species
Cre16.g676197 RPN1B, ATRPN1B Protein degradation.26S proteasome.regulatory... 0.06 OrthoFinder output from all 47 species
Dac_g15343 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Dcu_g06470 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.12 OrthoFinder output from all 47 species
Dde_g02349 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ehy_g09229 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
GSVIVT01020602001 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.06 OrthoFinder output from all 47 species
Gb_05383 RPN1A, ATRPN1A regulatory component RPN1 of 26S proteasome 0.1 OrthoFinder output from all 47 species
LOC_Os02g05340.1 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.14 OrthoFinder output from all 47 species
Lfl_g05692 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
MA_42234g0010 RPN1A, ATRPN1A 26S proteasome non-ATPase regulatory subunit 2 homolog A... 0.05 OrthoFinder output from all 47 species
Mp5g07110.1 RPN1A, ATRPN1A regulatory component RPN1 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Msp_g04528 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Pir_g09801 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ppi_g07596 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sam_g09731 No alias regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Smo228162 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.06 OrthoFinder output from all 47 species
Solyc07g053650.4.1 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.15 OrthoFinder output from all 47 species
Spa_g49868 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR002015 Proteasome/cyclosome_rpt 449 484
IPR040892 RPN1_N 50 353
IPR041433 RPN1_C 836 889
No external refs found!