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  5. Zm00001e024108_P001

Zm00001e024108_P001 (Zm00001e024108)


Aliases : Zm00001e024108

Description : no hits & (original description: none)


Gene families : OG0004116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024108_P001
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00098480 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AT4G08580 No alias microfibrillar-associated protein-related 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g026943 No alias not classified & original description: CDS=1-1236 0.04 OrthoFinder output from all 47 species
Ceric.34G063600.1 Ceric.34G063600 not classified & original description: pacid=50623043... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020539.41 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre05.g232950 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g11516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g17870.1 LOC_Os02g17870 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os06g22850.2 LOC_Os06g22850 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_261g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g23320.1 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Sam_g28460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g100500.3.1 Solyc01g100500 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR009730 MFAP1_C 166 387
No external refs found!