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  5. Zm00001e023856_P001

Zm00001e023856_P001 (Zm00001e023856)


Aliases : Zm00001e023856

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 101.0)


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023856_P001
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00212100 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G22330 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 OrthoFinder output from all 47 species
Adi_g055184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04046 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g25590 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015267 No alias not classified & original description: CDS=1-609 0.04 OrthoFinder output from all 47 species
Cba_g11789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G019900.1 Ceric.23G019900 not classified & original description: pacid=50610174... 0.02 OrthoFinder output from all 47 species
Dac_g11098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22884 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02374 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72834.1 LOC_Os01g72834 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
LOC_Os02g48340.1 LOC_Os02g48340 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g51890.1 LOC_Os02g51890 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os03g17760.1 LOC_Os03g17760 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g15889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429182g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_18853g0020 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g16573 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g19046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g19941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g21802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021063 No alias not classified & original description: CDS=1090-1812 0.02 OrthoFinder output from all 47 species
Solyc04g049920.4.1 Solyc04g049920 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc04g074310.4.1 Solyc04g074310 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g08652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001294_P001 Zm00001e001294 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e028635_P002 Zm00001e028635 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 29 87
No external refs found!