Zm00001e023650_P003 (BME3-ZF, BME3, GATA8,...)

Aliases : BME3-ZF, BME3, GATA8, Zm00001e023650

Description : transcription factor (GATA)

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e023650_P003

Target	Alias	Description	ECC score	Gene Family Method
AT3G20750	GATA29	GATA transcription factor 29	0.03	OrthoFinder output from all 47 species
Adi_g016252	GATA4	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g021303	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g058312	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g02207	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g16772	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17183	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g32134	GATA5	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g05894	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g32827	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g00831	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g04337	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g07273	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11283	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g20978	GATA9	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g14771	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g23859	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12583	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g62121	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51912.t1	GATA9, Aspi01Gene51912	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.18G043900.1	GATA15, Ceric.18G043900	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.25G025900.1	GATA9, Ceric.25G025900	transcription factor *(A/B-GATA) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.35G025300.1	GATA20, Ceric.35G025300	transcription factor *(A/B-GATA) & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g10781	GATA9	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g23014	GATA4	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g15306	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g15717	GATA4	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g34018	GATA12	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05496	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g06344	GATA5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g06602	GATA9	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g14273	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26522	GATA4	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01024194001	GATA5	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
GSVIVT01033385001	GATA9	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Gb_24250	GATA9	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
LOC_Os02g56250.1	BME3-ZF, BME3,...	transcription factor (GATA)	0.04	OrthoFinder output from all 47 species
LOC_Os04g45650.2	GATA5, LOC_Os04g45650	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
LOC_Os10g40810.1	GATA2, LOC_Os10g40810	transcription factor (GATA)	0.04	OrthoFinder output from all 47 species
Lfl_g03183	GATA4	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g12909	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
MA_10211121g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g48249	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g22942	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g03972	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g26719	GATA9	transcription factor *(A/B-GATA) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g30519	GATA2	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g40724	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14533	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17490	GATA12	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g25235	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009072	GATA4	transcription factor *(A/B-GATA) & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015681	GATA12	transcription factor *(A/B-GATA) & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016909	GATA9	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023073	GATA9	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0192.g025334	GATA12	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Solyc02g085190.2.1	HAN, MNP,...	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Solyc03g033660.4.1	GATA5, Solyc03g033660	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Solyc05g056120.3.1	BME3-ZF, BME3,...	transcription factor (GATA)	0.06	OrthoFinder output from all 47 species
Solyc10g018560.2.1	GATA4, Solyc10g018560	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Spa_g16103	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g30606	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g45626	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g03941	GATA9	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g43678	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e002326_P001	GATA4, Zm00001e002326	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e006272_P001	GATA17, Zm00001e006272	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e026256_P001	GATA23, Zm00001e026256	transcription factor (GATA)	0.07	OrthoFinder output from all 47 species
Zm00001e026601_P001	GATA20, Zm00001e026601	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e032513_P001	Zm00001e032513	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e037876_P002	GATA4, Zm00001e037876	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008373	sialyltransferase activity	IEP	HCCA
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	HCCA
MF	GO:0015020	glucuronosyltransferase activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	322	355

External Links

No external refs found!

Zm00001e023650_P003 (BME3-ZF, BME3, GATA8,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation