Zm00001e019791_P001 (Zm00001e019791)


Aliases : Zm00001e019791

Description : protein factor (NERD) of non-canonical RdDM pathway


Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019791_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00244500 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.04 OrthoFinder output from all 47 species
AT2G16485 No alias nucleic acid binding;zinc ion binding;DNA binding 0.07 OrthoFinder output from all 47 species
AT3G51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.07 OrthoFinder output from all 47 species
AT5G63700 No alias zinc ion binding;DNA binding 0.02 OrthoFinder output from all 47 species
Adi_g026023 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g077164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106014 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107366 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ala_g06673 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ala_g35223 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g03906 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Aob_g19106 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Aop_g08568 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Aop_g13646 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Azfi_s0288.g063262 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Cba_g23748 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g74669 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.03G088800.1 Ceric.03G088800 not classified & original description: pacid=50572957... 0.11 OrthoFinder output from all 47 species
Ceric.09G099900.1 Ceric.09G099900 protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Dac_g09152 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Dcu_g02022 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.09 OrthoFinder output from all 47 species
Dde_g21523 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ehy_g05103 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.08 OrthoFinder output from all 47 species
Ehy_g26663 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01024181001 No alias Zinc finger CCCH domain-containing protein 19... 0.05 OrthoFinder output from all 47 species
Gb_13136 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 OrthoFinder output from all 47 species
LOC_Os05g34780.1 LOC_Os05g34780 Zinc finger CCCH domain-containing protein 44... 0.02 OrthoFinder output from all 47 species
LOC_Os09g36090.1 LOC_Os09g36090 protein factor (NERD) of non-canonical RdDM pathway 0.11 OrthoFinder output from all 47 species
LOC_Os10g36810.1 LOC_Os10g36810 protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Len_g13930 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g05726 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Lfl_g06273 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.07 OrthoFinder output from all 47 species
Lfl_g35904 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
MA_116694g0010 No alias Zinc finger CCCH domain-containing protein 19... 0.06 OrthoFinder output from all 47 species
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Msp_g38424 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Nbi_g14762 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.07 OrthoFinder output from all 47 species
Ore_g10283 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g45316 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ore_g45456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06499 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g12625 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.08 OrthoFinder output from all 47 species
Ppi_g35752 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g49417 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ppi_g58382 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017691 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Sam_g52359 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Solyc02g084510.3.1 Solyc02g084510 Zinc finger CCCH domain-containing protein 44... 0.06 OrthoFinder output from all 47 species
Solyc03g033630.3.1 Solyc03g033630 Zinc finger CCCH domain-containing protein 44... 0.06 OrthoFinder output from all 47 species
Solyc11g062220.2.1 Solyc11g062220 Zinc finger CCCH domain-containing protein 19... 0.05 OrthoFinder output from all 47 species
Spa_g15744 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Spa_g30973 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Tin_g09943 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.09 OrthoFinder output from all 47 species
Tin_g43997 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004343 Plus-3_dom 884 986
IPR003169 GYF 1214 1254
IPR003121 SWIB_MDM2_domain 747 818
No external refs found!