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  5. Zm00001e017031_P001

Zm00001e017031_P001 (NTMC2T3, SYTF,...)


Aliases : NTMC2T3, SYTF, NTMC2TYPE3, ATSYTF, Zm00001e017031

Description : Synaptotagmin-5 OS=Arabidopsis thaliana (sp|q8l706|syt5_arath : 94.0)


Gene families : OG0002262 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002262_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e017031_P001
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT3G18370 NTMC2T3, SYTF,... C2 domain-containing protein 0.08 OrthoFinder output from all 47 species
Aev_g06103 NTMC2T3, SYTF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07339 NTMC2T3, SYTF,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0102.g044545 NTMC2T3, SYTF,... not classified & original description: CDS=276-2672 0.03 OrthoFinder output from all 47 species
Ceric.15G048600.1 NTMC2T3, SYTF,... not classified & original description: pacid=50640643... 0.03 OrthoFinder output from all 47 species
Ceric.21G075600.1 NTMC2T3, SYTF,... not classified & original description: pacid=50603594... 0.02 OrthoFinder output from all 47 species
Dcu_g01839 NTMC2T3, SYTF,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13716 NTMC2T3, SYTF,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008297001 NTMC2T3, SYTF,... Synaptotagmin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g18825 NTMC2T3, SYTF,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp4g19570.1 NTMC2T3, SYTF,... Synaptotagmin-5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Ore_g15688 NTMC2T3, SYTF,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004772 NTMC2T3, SYTF,... not classified & original description: CDS=151-2862 0.02 OrthoFinder output from all 47 species
Sam_g24618 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51689 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc03g119440.3.1 NTMC2T3, SYTF,... Synaptotagmin-5 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000008 C2_dom 613 709
IPR000008 C2_dom 289 394
IPR000008 C2_dom 480 578
No external refs found!