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  5. Zm00001e016654_P001

Zm00001e016654_P001 (Zm00001e016654)


Aliases : Zm00001e016654

Description : GRC3 polynucleotide kinase involved in ITS2 rRNA removal


Gene families : OG0006547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016654_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g015369 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Aspi01Gene61217.t1 Aspi01Gene61217 polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Cre03.g168350 No alias Polynucleotide 5-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g08850.1 LOC_Os01g08850 GRC3 polynucleotide kinase involved in ITS2 rRNA removal 0.06 OrthoFinder output from all 47 species
Len_g11686 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
MA_132031g0010 No alias Polynucleotide 5-hydroxyl-kinase NOL9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g28270.1 No alias GRC3 polynucleotide kinase involved in ITS2 rRNA removal 0.02 OrthoFinder output from all 47 species
Pir_g17120 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Sam_g27409 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Tin_g22067 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR032319 CLP1_P 52 189
No external refs found!