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  5. Zm00001e015689_P001

Zm00001e015689_P001 (VCS, Zm00001e015689)


Aliases : VCS, Zm00001e015689

Description : scaffold component VCS of mRNA decapping complex


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015689_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.11 OrthoFinder output from all 47 species
Adi_g055830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Aev_g04893 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Ala_g11471 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Ala_g13274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.08 OrthoFinder output from all 47 species
Als_g63425 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Aop_g08777 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene16678.t1 VCS, Aspi01Gene16678 scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030776 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Cba_g04739 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Cba_g14873 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Cba_g27245 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Cba_g33653 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Ceric.06G068900.1 VCS, Ceric.06G068900 scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.27 VCS Varicose-related protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre12.g553100 VCR Varicose-related protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g32341 VCS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g11716 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Dde_g10360 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g07954 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01006976001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.09 OrthoFinder output from all 47 species
Gb_04906 VCS scaffold component VCS of mRNA decapping complex 0.09 OrthoFinder output from all 47 species
LOC_Os02g49090.1 VCS, LOC_Os02g49090 scaffold component VCS of mRNA decapping complex 0.06 OrthoFinder output from all 47 species
LOC_Os06g19660.1 VCS, LOC_Os06g19660 scaffold component VCS of mRNA decapping complex 0.1 OrthoFinder output from all 47 species
Len_g08328 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Lfl_g18274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.08 OrthoFinder output from all 47 species
MA_10427487g0020 VCS Varicose-related protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431534g0010 VCR Varicose-related protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431534g0020 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
MA_10431534g0030 VCS scaffold component VCS of mRNA decapping complex 0.05 OrthoFinder output from all 47 species
MA_39123g0010 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14526 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Msp_g26178 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Nbi_g03858 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Ore_g09332 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.09 OrthoFinder output from all 47 species
Ore_g36602 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Ppi_g03283 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g10110 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.04 OrthoFinder output from all 47 species
Sam_g51656 No alias scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Solyc07g065950.4.1 VCS, Solyc07g065950 scaffold component VCS of mRNA decapping complex 0.09 OrthoFinder output from all 47 species
Solyc10g005920.4.1 VCS, Solyc10g005920 scaffold component VCS of mRNA decapping complex 0.04 OrthoFinder output from all 47 species
Spa_g07074 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Spa_g10517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17551 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Spa_g37076 VCR not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08563 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 195 283
IPR032401 EDC4_WD40 367 508
No external refs found!