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  5. Zm00001e013281_P004

Zm00001e013281_P004 (Zm00001e013281)


Aliases : Zm00001e013281

Description : DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica (sp|q7y183|rh10_orysj : 651.0)


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013281_P004
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.1 OrthoFinder output from all 47 species
Adi_g103437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037272 No alias not classified & original description: CDS=107-1516 0.02 OrthoFinder output from all 47 species
Cba_g10042 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G021600.1 Ceric.06G021600 not classified & original description: pacid=50619132... 0.02 OrthoFinder output from all 47 species
Ceric.17G072400.1 AtRH36, SWA3,... SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.20 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Dac_g04191 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01036761001 AtRH36, SWA3, RH36 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os03g46610.1 LOC_Os03g46610 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os07g43980.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.03 OrthoFinder output from all 47 species
MA_6520706g0010 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_8567568g0010 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g19410.1 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.07 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Ore_g26846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03371 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g04436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g005520.3.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.1 OrthoFinder output from all 47 species
Solyc10g007550.3.1 Solyc10g007550 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Spa_g06006 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g11648 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g37763 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 337 444
IPR011545 DEAD/DEAH_box_helicase_dom 131 301
No external refs found!