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  5. Zm00001e012643_P002

Zm00001e012643_P002 (ATPRP40C, PRP40C,...)


Aliases : ATPRP40C, PRP40C, Zm00001e012643

Description : pre-mRNA-processing protein (PRP40C)


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012643_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00102340 ATPRP40C,... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Adi_g011526 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Adi_g086424 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Adi_g116721 ATPRP40C, PRP40C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06832 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Aob_g04487 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Aop_g08237 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036110 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.07 OrthoFinder output from all 47 species
Ceric.13G036100.1 ATPRP40C,... pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Cre09.g393551 ATPRP40C, PRP40C No description available 0.01 OrthoFinder output from all 47 species
Dac_g07036 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g14070 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Dde_g16444 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01010209001 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.09 OrthoFinder output from all 47 species
Gb_26149 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.02 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.1 OrthoFinder output from all 47 species
Lfl_g02397 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.07 OrthoFinder output from all 47 species
Mp5g09830.1 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.05 OrthoFinder output from all 47 species
Nbi_g03206 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ore_g35746 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Pir_g11410 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.08 OrthoFinder output from all 47 species
Ppi_g32127 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0257.g026834 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Sam_g10525 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Smo439648 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.1 OrthoFinder output from all 47 species
Spa_g30945 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Tin_g06690 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 783 831
IPR002713 FF_domain 717 764
IPR002713 FF_domain 849 895
IPR002713 FF_domain 950 1001
IPR001202 WW_dom 495 521
No external refs found!