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  5. Zm00001e008367_P002

Zm00001e008367_P002 (Zm00001e008367)


Aliases : Zm00001e008367

Description : transcription factor (CAMTA)


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e008367_P002
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 CAMTA3, SR1,... RNA biosynthesis.transcriptional activation.CAMTA... 0.02 OrthoFinder output from all 47 species
AT1G67310 No alias Calmodulin-binding transcription activator protein with... 0.04 OrthoFinder output from all 47 species
AT4G16150 No alias calmodulin binding;transcription regulators 0.03 OrthoFinder output from all 47 species
Als_g08814 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046489 No alias CAMTA-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.12G055700.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.24G013800.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.31G019600.1 Ceric.31G019600 CAMTA-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
GSVIVT01004860001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.03 OrthoFinder output from all 47 species
GSVIVT01010510001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.02 OrthoFinder output from all 47 species
GSVIVT01035027001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.03 OrthoFinder output from all 47 species
LOC_Os01g69910.1 LOC_Os01g69910 transcription factor (CAMTA) 0.06 OrthoFinder output from all 47 species
LOC_Os04g31900.1 LOC_Os04g31900 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Solyc01g105230.4.1 Solyc01g105230 transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
Solyc12g035520.3.1 Solyc12g035520 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Spa_g30019 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21019 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035004_P001 Zm00001e035004 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 832 850
IPR000048 IQ_motif_EF-hand-BS 854 874
IPR005559 CG-1_dom 13 126
IPR002909 IPT_dom 422 494
No external refs found!