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  5. Zm00001e006881_P003

Zm00001e006881_P003 (Zm00001e006881)


Aliases : Zm00001e006881

Description : no hits & (original description: none)


Gene families : OG0004656 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004656_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006881_P003
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00165700 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT4G27010 No alias CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis... 0.13 OrthoFinder output from all 47 species
Aev_g29407 No alias transposon-derived factor HDP1 & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g25180 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G076400.1 Ceric.09G076400 transposon-derived factor HDP1 & original description:... 0.05 OrthoFinder output from all 47 species
Cre02.g074300 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g30913 No alias transposon-derived factor HDP1 & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15931 No alias transposon-derived factor HDP1 & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g17555 No alias transposon-derived factor HDP1 & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037632001 No alias No description available 0.09 OrthoFinder output from all 47 species
Gb_10022 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os04g53380.1 LOC_Os04g53380 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Len_g10461 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
MA_650948g0010 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
MA_84396g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_9824477g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp2g07950.1 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Msp_g24518 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Smo442019 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc02g065500.4.1 Solyc02g065500 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Spa_g06998 No alias transposon-derived factor HDP1 & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021714 Npa1_N 88 393
IPR032436 NopRA1_C 2038 2228
No external refs found!