Zm00001e006497_P001 (Zm00001e006497)


Aliases : Zm00001e006497

Description : component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex


Gene families : OG0003646 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003646_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006497_P001

Target Alias Description ECC score Gene Family Method Actions
Cba_g02385 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.73 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.02 OrthoFinder output from all 47 species
Dcu_g02596 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
LOC_Os04g58640.1 LOC_Os04g58640 component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex 0.03 OrthoFinder output from all 47 species
Pir_g11579 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Ppi_g01819 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Solyc03g025880.3.1 Solyc03g025880 component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex 0.03 OrthoFinder output from all 47 species
Tin_g01727 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
CC GO:0005849 mRNA cleavage factor complex IEA Interproscan
BP GO:0006378 mRNA polyadenylation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006480 N-terminal protein amino acid methylation IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR016706 Cleav_polyA_spec_factor_su5 8 195
No external refs found!