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  5. Zm00001e005644_P001

Zm00001e005644_P001 (SPI, Zm00001e005644)


Aliases : SPI, Zm00001e005644

Description : Protein SPIRRIG OS=Arabidopsis thaliana (sp|f4hzb2|bcha1_arath : 4464.0)


Gene families : OG0003198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005644_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G03060 SPI Beige/BEACH domain ;WD domain, G-beta repeat protein 0.07 OrthoFinder output from all 47 species
Ala_g30609 SPI not classified & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0012.g012952 SPI not classified & original description: CDS=1-3084 0.05 OrthoFinder output from all 47 species
Ceric.12G054200.1 SPI, Ceric.12G054200 not classified & original description: pacid=50600477... 0.06 OrthoFinder output from all 47 species
Dcu_g48259 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003123001 SPI BEACH domain-containing protein A2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_31352 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Gb_31353 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os03g53280.1 SPI, LOC_Os03g53280 Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g13081 SPI not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp2g15880.1 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026126 SPI not classified & original description: CDS=210-10721 0.02 OrthoFinder output from all 47 species
Solyc09g065700.3.1 SPI, Solyc09g065700 Protein SPIRRIG OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 3331 3360
IPR001680 WD40_repeat 3377 3409
IPR000409 BEACH_dom 2968 3247
IPR023362 PH-BEACH_dom 2874 2929
No external refs found!