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  5. Zm00001e005517_P002

Zm00001e005517_P002 (CHR01, CHR1, CHA1,...)


Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1, Zm00001e005517

Description : chromatin remodeling factor (DDM1)


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005517_P002
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.04 OrthoFinder output from all 47 species
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.04 OrthoFinder output from all 47 species
Adi_g104730 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03411 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ala_g22712 CHR11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01913 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18378 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aop_g05226 CHR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08885 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25745 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Azfi_s0754.g085337 No alias not classified & original description: CDS=1-1965 0.05 OrthoFinder output from all 47 species
Cba_g06040 CHR5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.02G040400.1 CHR5, Ceric.02G040400 not classified & original description: pacid=50584074... 0.08 OrthoFinder output from all 47 species
Ceric.21G025000.1 CHR11, Ceric.21G025000 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.05 OrthoFinder output from all 47 species
Ceric.21G081900.1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.188 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000983.26 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020960.24 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.05 OrthoFinder output from all 47 species
Cre09.g390000 CHR17 RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder output from all 47 species
Dac_g06908 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Dac_g07364 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Dcu_g42061 CHR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g07066 ATCHR12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018979001 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_16888 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os03g51230.2 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.04 OrthoFinder output from all 47 species
LOC_Os09g27060.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Len_g14805 CHR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27757 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
MA_102992g0010 CHR17 Probable chromatin-remodeling complex ATPase chain... 0.02 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.06 OrthoFinder output from all 47 species
MA_42406g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Mp4g12200.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Msp_g15462 No alias chromatin remodeling factor *(ALC1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02499 CHR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04407 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g23086 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g26462 No alias chromatin remodeling factor *(ALC1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16726 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ppi_g12699 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15409 CHR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32094 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024260 CHR01, CHR1,... not classified & original description: CDS=245-1573 0.04 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo102612 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc01g079690.4.1 ATCHR12, Solyc01g079690 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
Solyc02g062780.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.07 OrthoFinder output from all 47 species
Solyc08g029130.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Spa_g13795 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g08903 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14271 PKL, GYM, CHR6,... CHD3-type chromaTin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Tin_g31900 CHR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 599 711
IPR000330 SNF2_N 283 575
No external refs found!