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  5. Zm00001e004416_P001

Zm00001e004416_P001 (RH8, ATRH8, Zm00001e004416)


Aliases : RH8, ATRH8, Zm00001e004416

Description : DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica (sp|q109g2|rh12_orysj : 844.0)


Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004416_P001
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AT3G61240 No alias DEA(D/H)-box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
AT4G00660 RH8, ATRH8 RNAhelicase-like 8 0.02 OrthoFinder output from all 47 species
Aop_g02137 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene16602.t1 RH8, ATRH8,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05828 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001086.7 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Cre04.g223850 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dcu_g08850 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02256 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026866001 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os04g45040.3 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Lfl_g02022 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g14570.1 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc05g048850.4.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc10g017530.3.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 355 461
IPR011545 DEAD/DEAH_box_helicase_dom 154 318
No external refs found!