Aliases : TTN8, ATSMC1, SMC1, Zm00001e003843
Description : component SMC1/TTN8 of cohesin regulator complex
Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00047p00208430 | TTN8, ATSMC1,... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.05 | OrthoFinder output from all 47 species | |
AMTR_s00047p00208850 | TTN8, ATSMC1,... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.1 | OrthoFinder output from all 47 species | |
AT3G54670 | TTN8, ATSMC1, SMC1 | Structural maintenance of chromosomes (SMC) family protein | 0.1 | OrthoFinder output from all 47 species | |
Adi_g010815 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.07 | OrthoFinder output from all 47 species | |
Aev_g04880 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02668 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.05 | OrthoFinder output from all 47 species | |
Als_g01964 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.05 | OrthoFinder output from all 47 species | |
Aob_g04491 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0002.g001113 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.32G063300.1 | TTN8, ATSMC1,... | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020553.145 | TTN8, ATSMC1, SMC1 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder output from all 47 species | |
Cre15.g635800 | TTN8, ATSMC1, SMC1 | Structural maintenance of chromosomes protein 1... | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01028343001 | TTN8, ATSMC1, SMC1 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.11 | OrthoFinder output from all 47 species | |
LOC_Os12g44390.1 | TTN8, ATSMC1,... | component SMC1/TTN8 of cohesin regulator complex | 0.14 | OrthoFinder output from all 47 species | |
Lfl_g03468 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.02 | OrthoFinder output from all 47 species | |
MA_10429667g0010 | TTN8, ATSMC1, SMC1 | Structural maintenance of chromosomes protein 1... | 0.04 | OrthoFinder output from all 47 species | |
MA_10437171g0020 | TTN8, ATSMC1, SMC1 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
MA_15758g0010 | TTN8, ATSMC1, SMC1 | Structural maintenance of chromosomes protein 1... | 0.02 | OrthoFinder output from all 47 species | |
Mp1g29090.1 | TTN8, ATSMC1, SMC1 | component SMC1/TTN8 of cohesin regulator complex | 0.05 | OrthoFinder output from all 47 species | |
Msp_g15568 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g08908 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g13217 | TTN8, ATSMC1, SMC1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g01407 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.07 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0043.g012930 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g07221 | No alias | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.04 | OrthoFinder output from all 47 species | |
Smo236008 | TTN8, ATSMC1, SMC1 | Structural maintenance of chromosomes protein 1... | 0.05 | OrthoFinder output from all 47 species | |
Solyc06g083870.3.1 | TTN8, ATSMC1,... | component SMC1/TTN8 of cohesin regulator complex | 0.13 | OrthoFinder output from all 47 species | |
Spa_g10305 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g02901 | TTN8, ATSMC1, SMC1 | component *(SMC1/TTN8) of cohesin regulator complex &... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
CC | GO:0005694 | chromosome | IEA | Interproscan |
BP | GO:0051276 | chromosome organization | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003682 | chromatin binding | IEP | HCCA |
BP | GO:0006325 | chromatin organization | IEP | HCCA |
BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006476 | protein deacetylation | IEP | HCCA |
BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
CC | GO:0008023 | transcription elongation factor complex | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016575 | histone deacetylation | IEP | HCCA |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0031491 | nucleosome binding | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
BP | GO:0035601 | protein deacylation | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051170 | import into nucleus | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0098732 | macromolecule deacylation | IEP | HCCA |
No external refs found! |