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  5. Gb_39217

Gb_39217 (EMB1865)


Aliases : EMB1865

Description : CFM2-type plastidial RNA splicing factor


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39217
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 ATCFM3A, CFM3A,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00028p00245370 ATCFM2, CFM2,... RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00079p00107040 EMB1865,... CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.11 OrthoFinder output from all 47 species
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.15 OrthoFinder output from all 47 species
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.11 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 OrthoFinder output from all 47 species
Aev_g01593 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
Aob_g17963 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06265 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14100.t1 ATCFM2, CFM2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013833 ATCFM2, CFM2 not classified & original description: CDS=1-3243 0.1 OrthoFinder output from all 47 species
Azfi_s0203.g057681 ATCFM2, CFM2 not classified & original description: CDS=1647-4091 0.03 OrthoFinder output from all 47 species
Cba_g11329 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16678 ATCFM3A, CFM3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.04 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.04 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.06 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30519 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008296001 EMB1865 CRM-domain containing factor CFM3,... 0.09 OrthoFinder output from all 47 species
GSVIVT01018109001 ATCFM3A, CFM3A RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01031001001 ATCRS1, CRS1 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
LOC_Os09g19850.1 LOC_Os09g19850 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
MA_10435740g0010 EMB1865 CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.08 OrthoFinder output from all 47 species
Nbi_g17170 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25479 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35546 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.02 OrthoFinder output from all 47 species
Pir_g18629 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo20706 EMB1865 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Smo412905 No alias CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Spa_g09433 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.09 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Zm00001e041033_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e041034_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 337 419
IPR001890 RNA-binding_CRM 777 863
IPR001890 RNA-binding_CRM 567 651
No external refs found!