Aliases : RPOA
Description : RpoA core component plastid-encoded RNA polymerase
Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
ATCG00740 | RPOA | RNA polymerase subunit alpha | 0.05 | OrthoFinder output from all 47 species | |
Aev_g02093 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.1 | OrthoFinder output from all 47 species | |
Als_g16097 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.06 | OrthoFinder output from all 47 species | |
Aob_g19924 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g60899 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.05G041900.1 | RPOA, Ceric.05G041900 | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.12 | OrthoFinder output from all 47 species | |
Ceric.1Z019700.1 | RPOA, Ceric.1Z019700 | not classified & original description: pacid=50586392... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.38G008600.1 | RPOA, Ceric.38G008600 | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.12 | OrthoFinder output from all 47 species | |
Dcu_g20888 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g16842.1 | RPOA, LOC_Os04g16842 | RpoA core component plastid-encoded RNA polymerase | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os06g39700.1 | RPOA, LOC_Os06g39700 | RpoA core component plastid-encoded RNA polymerase | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g19118 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.05 | OrthoFinder output from all 47 species | |
Mpzg00720.1 | RPOA | RpoA core component plastid-encoded RNA polymerase | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g19365 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.1 | OrthoFinder output from all 47 species | |
Pir_g12462 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
Solyc00g500029.1.1 | RPOA, Solyc00g500029 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.07 | OrthoFinder output from all 47 species | |
Solyc00g500074.1.1 | RPOA, Solyc00g500074 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.07 | OrthoFinder output from all 47 species | |
Solyc00g500157.1.1 | RPOA, Solyc00g500157 | RpoA core component plastid-encoded RNA polymerase | 0.07 | OrthoFinder output from all 47 species | |
Solyc01g017440.1.1 | RPOA, Solyc01g017440 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.08 | OrthoFinder output from all 47 species | |
Solyc12g035890.3.1 | RPOA, Solyc12g035890 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g18101 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001971 | Ribosomal_S11 | 1 | 38 |
No external refs found! |