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Gb_34245


Description : Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana (sp|q9sa60|ppr6_arath : 366.0)


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34245
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.02 OrthoFinder output from all 47 species
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 OrthoFinder output from all 47 species
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Cba_g14976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.05 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
Zm00001e019596_P001 Zm00001e019596 Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 601 648
IPR002885 Pentatricopeptide_repeat 295 320
IPR002885 Pentatricopeptide_repeat 499 527
No external refs found!