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  5. Gb_33199

Gb_33199


Description : no hits & (original description: none)


Gene families : OG0006058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33199

Target Alias Description ECC score Gene Family Method Actions
Ala_g11819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0412.g068539 No alias not classified & original description: CDS=83-4372 0.04 OrthoFinder output from all 47 species
Cba_g17445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009356001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os01g56000.1 LOC_Os01g56000 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g28464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427717g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_10431539g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp3g07560.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g13220 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07631 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g01409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000568 No alias not classified & original description: CDS=97-4470 0.02 OrthoFinder output from all 47 species
Sam_g08969 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Solyc04g077940.4.1 Solyc04g077940 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e019718_P003 Zm00001e019718 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 805 868
IPR000504 RRM_dom 627 684
No external refs found!