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  5. Gb_33063

Gb_33063


Description : component SRm160 of RNA quality control Exon Junction complex


Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Gb_33063

Target Alias Description ECC score Gene Family Method Actions
AT2G29210 No alias splicing factor PWI domain-containing protein 0.04 OrthoFinder output from all 47 species
Als_g54316 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g11891 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.1Z098000.1 Ceric.1Z098000 component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.35G044600.1 Ceric.35G044600 component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cre16.g678050 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Dac_g07102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18749 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g22461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46327 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Dde_g23077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024906001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
Lfl_g10938 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_1065g0010 No alias component SRm160 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Mp8g09170.1 No alias component SRm160 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
Msp_g21958 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ppi_g42357 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Solyc09g030390.3.1 Solyc09g030390 component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Tin_g23972 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Zm00001e001194_P001 Zm00001e001194 component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 46 115
No external refs found!