Gb_29938 (CMPG2, ATCMPG2)

Aliases : CMPG2, ATCMPG2

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_29938

Target	Alias	Description	ECC score	Gene Family Method
AT3G02840	No alias	ARM repeat superfamily protein	0.04	OrthoFinder output from all 47 species
Aev_g37454	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11423	PUB15	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g61569	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g47434	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Dcu_g01209	PUB23	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g01521	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26825	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os04g34140.1	PUB29, ATPUB29,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os04g49970.1	PUB23, LOC_Os04g49970	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Ore_g08921	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g29886	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c22_7680V3.1	Pp3c22_7680	CYS, MET, PRO, and GLY protein 2	0.01	OrthoFinder output from all 47 species
Solyc01g007000.4.1	PUB22, Solyc01g007000	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007020.4.1	PUB23, Solyc01g007020	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007030.3.1	PUB22, Solyc01g007030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007050.3.1	PUB24, Solyc01g007050	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g009320.2.1	PUB23, Solyc01g009320	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc11g006030.1.1	Solyc11g006030	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g068940.1.1	PUB24, Solyc11g068940	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e022698_P001	PUB26, Zm00001e022698	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e039417_P001	PUB23, Zm00001e039417	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	10	81

External Links

No external refs found!

Gb_29938 (CMPG2, ATCMPG2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation