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Aliases : emb2746
Description : exo-/endoribonuclease (RNase J)
Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_29169 | |
| Cluster | HCCA: Cluster_135 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00241540 | emb2746,... | RNA processing.organelle machineries.ribonuclease... | 0.04 | OrthoFinder output from all 47 species | |
| AT5G63420 | emb2746 | RNA-metabolising metallo-beta-lactamase family protein | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g32457 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22857 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene13679.t1 | emb2746, Aspi01Gene13679 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0392.g067768 | emb2746 | exoribonuclease *(RNase J) & original description: CDS=108-2618 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g24290 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cre16.g683050 | emb2746 | RNA processing.organelle machineries.ribonuclease... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g13982 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008515001 | emb2746 | Vesicle trafficking.target membrane tethering.DSL1... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os02g33610.1 | emb2746, LOC_Os02g33610 | exo-/endoribonuclease (RNase J) | 0.03 | OrthoFinder output from all 47 species | |
| MA_10429859g0010 | emb2746 | exo-/endoribonuclease (RNase J) | 0.04 | OrthoFinder output from all 47 species | |
| MA_10430099g0010 | emb2746 | no description available(sp|q84w56|rnj_arath : 150.0) | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g10830.1 | emb2746 | exo-/endoribonuclease (RNase J) | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g15010 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g25599 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30251 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g25090 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012058 | emb2746 | exoribonuclease *(RNase J) & original description: CDS=64-2889 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g23289 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g111260.3.1 | emb2746, Solyc03g111260 | exo-/endoribonuclease (RNase J) | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g18551 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e013900_P001 | emb2746, Zm00001e013900 | exo-/endoribonuclease (RNase J) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e025070_P003 | emb2746, Zm00001e025070 | exo-/endoribonuclease (RNase J) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016782 | transferase activity, transferring sulphur-containing groups | IEP | HCCA |
| MF | GO:0035596 | methylthiotransferase activity | IEP | HCCA |
| MF | GO:0050497 | alkylthioltransferase activity | IEP | HCCA |
| MF | GO:0051213 | dioxygenase activity | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |