Aliases : NUP96, PRE, SAR3, MOS3
Description : NUP96 scaffold nucleoporin of nuclear pore complex
Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G10390 | No alias | Nucleoporin autopeptidase | 0.03 | OrthoFinder output from all 47 species | |
AT1G80680 | NUP96, PRE, SAR3, MOS3 | SUPPRESSOR OF AUXIN RESISTANCE 3 | 0.05 | OrthoFinder output from all 47 species | |
Adi_g086878 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g06973 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Als_g02615 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g08739 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g62728 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0012.g012932 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g09959 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.23G078300.1 | Ceric.23G078300 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G008200.1 | NUP96, PRE,... | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Cre02.g086887 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Dac_g07068 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g08969 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g22620 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01019716001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g07580.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os12g06890.1 | LOC_Os12g06890 | NUP98 nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g02296 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.02 | OrthoFinder output from all 47 species | |
MA_10434126g0020 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.06 | OrthoFinder output from all 47 species | |
MA_62342g0010 | No alias | NUP98 nucleoporin of nuclear pore complex | 0.08 | OrthoFinder output from all 47 species | |
Mp2g01050.1 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex.... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g05465 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g15205 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g22018 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g03244 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g35134 | No alias | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g117120.4.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.07 | OrthoFinder output from all 47 species | |
Solyc04g007280.3.1 | Solyc04g007280 | NUP98 nucleoporin of nuclear pore complex | 0.06 | OrthoFinder output from all 47 species | |
Tin_g11653 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e038897_P001 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005643 | nuclear pore | IEA | Interproscan |
BP | GO:0006913 | nucleocytoplasmic transport | IEA | Interproscan |
MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005049 | nuclear export signal receptor activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
CC | GO:0030120 | vesicle coat | IEP | HCCA |
CC | GO:0030126 | COPI vesicle coat | IEP | HCCA |
BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140104 | molecular carrier activity | IEP | HCCA |
MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |