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  5. Gb_27515

Gb_27515


Description : component MED19 of head module of MEDIATOR transcription co-activator complex


Gene families : OG0006792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006792_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27515
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00233660 evm_27.TU.AmTr_v1... GTP-binding protein At3g49725, chloroplastic... 0.1 OrthoFinder output from all 47 species
AT5G57960 No alias GTP-binding protein, HflX 0.07 OrthoFinder output from all 47 species
Adi_g059600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03313 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.34G037600.1 Ceric.34G037600 not classified & original description: pacid=50623913... 0.04 OrthoFinder output from all 47 species
Dcu_g19282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009778001 No alias GTP-binding protein At3g49725, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os11g38020.1 LOC_Os11g38020 GTP-binding protein At3g49725, chloroplastic... 0.05 OrthoFinder output from all 47 species
Lfl_g27465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437248g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp8g01100.1 No alias GTP-binding protein At3g49725, chloroplastic... 0.02 OrthoFinder output from all 47 species
Nbi_g31437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g13180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo77541 No alias GTP-binding protein At3g49725, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g07834 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e021243_P003 Zm00001e021243 GTP-binding protein At3g49725, chloroplastic... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025121 GTPase_HflX_N 160 248
IPR006073 GTP-bd 336 454
IPR032305 GTP-bd_M 251 328
No external refs found!