Gb_21699 (SMG7)


Aliases : SMG7

Description : SMG7 Nonsense-Mediated mRNA Decay protein


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21699
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
Aev_g05541 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Als_g23897 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Aop_g13762 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g015951 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0113.g045981 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Ceric.27G021400.1 SMG7, Ceric.27G021400 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g23233 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007284001 No alias Protein SMG7L OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_10435713g0020 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
MA_32980g0010 SMG7 Protein SMG7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp8g12080.1 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species
Ore_g13643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43522 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g11325 SMG7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25590 No alias Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Solyc12g019960.2.1 SMG7, Solyc12g019960 SMG7 Nonsense-Mediated mRNA Decay protein 0.04 OrthoFinder output from all 47 species
Spa_g17881 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e009613_P002 SMG7, Zm00001e009613 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
InterPro domains Description Start Stop
IPR018834 DNA/RNA-bd_Est1-type 209 552
IPR019458 Est1-like_N 69 196
No external refs found!