Aliases : SMG7
Description : SMG7 Nonsense-Mediated mRNA Decay protein
Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_21699 | |
Cluster | HCCA: Cluster_134 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aev_g05541 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.02 | OrthoFinder output from all 47 species | |
Als_g23897 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g13762 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0022.g015951 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0113.g045981 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.27G021400.1 | SMG7, Ceric.27G021400 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g23233 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01007284001 | No alias | Protein SMG7L OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
MA_10435713g0020 | SMG7 | SMG7 Nonsense-Mediated mRNA Decay protein | 0.02 | OrthoFinder output from all 47 species | |
MA_32980g0010 | SMG7 | Protein SMG7 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Mp8g12080.1 | SMG7 | SMG7 Nonsense-Mediated mRNA Decay protein | 0.03 | OrthoFinder output from all 47 species | |
Ore_g13643 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g43522 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g11325 | SMG7 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g25590 | No alias | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc12g019960.2.1 | SMG7, Solyc12g019960 | SMG7 Nonsense-Mediated mRNA Decay protein | 0.04 | OrthoFinder output from all 47 species | |
Spa_g17881 | SMG7 | Nonsense-Mediated mRNA Decay protein *(SMG7) & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e009613_P002 | SMG7, Zm00001e009613 | SMG7 Nonsense-Mediated mRNA Decay protein | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005543 | phospholipid binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
MF | GO:0008131 | primary amine oxidase activity | IEP | HCCA |
MF | GO:0008289 | lipid binding | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0009308 | amine metabolic process | IEP | HCCA |
MF | GO:0015267 | channel activity | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
MF | GO:0048038 | quinone binding | IEP | HCCA |
No external refs found! |