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  5. Gb_20425

Gb_20425


Description : polynucleotide phosphorylase (PNP)


Gene families : OG0002534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20425

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.1 OrthoFinder output from all 47 species
Aev_g04157 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Als_g03851 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Ceric.25G023900.1 Ceric.25G023900 EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020603.85 No alias RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021073.40 No alias RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Ehy_g04014 No alias EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.08 OrthoFinder output from all 47 species
MA_10427258g0020 No alias polynucleotide phosphorylase (PNP) 0.04 OrthoFinder output from all 47 species
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.04 OrthoFinder output from all 47 species
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.05 OrthoFinder output from all 47 species
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.07 OrthoFinder output from all 47 species
Ore_g28521 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sam_g09102 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Solyc02g086600.3.1 Solyc02g086600 polynucleotide phosphorylase (PNP) 0.09 OrthoFinder output from all 47 species
Solyc08g066120.4.1 RIF10, PNP,... polynucleotide phosphorylase (PNP) 0.03 OrthoFinder output from all 47 species
Zm00001e015113_P001 Zm00001e015113 polynucleotide phosphorylase (PNP) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 104 233
IPR001247 ExoRNase_PH_dom1 414 547
IPR004088 KH_dom_type_1 655 704
IPR015847 ExoRNase_PH_dom2 236 299
IPR015848 PNPase_PH_RNA-bd_bac/org-type 332 410
IPR003029 S1_domain 718 788
No external refs found!