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  5. Gb_20009

Gb_20009 (PGP6)


Aliases : PGP6

Description : subfamily ABCB transporter


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20009

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00128080 evm_27.TU.AmTr_v1... Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
AMTR_s00145p00075460 PGP20,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AT2G39480 PGP6 P-glycoprotein 6 0.05 OrthoFinder output from all 47 species
AT3G55320 PGP20 P-glycoprotein 20 0.02 OrthoFinder output from all 47 species
Adi_g019429 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03413 PGP6 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18719 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g34073 PGP20 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g33802 No alias subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13591 PGP6 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20592.t1 PGP6, Aspi01Gene20592 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32170.t1 ABCB14,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62048.t2 PGP2, Aspi01Gene62048 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0203.g057675 ABCB19,... subfamily ABCB transporter & original description: CDS=1-3912 0.03 OrthoFinder output from all 47 species
Ceric.10G028600.1 PGP20, Ceric.10G028600 subfamily ABCB transporter & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g10744 PGP6 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22175 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12010 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21294 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016617001 PGP20 Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
GSVIVT01025040001 PGP20 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
LOC_Os01g74470.1 PGP20, LOC_Os01g74470 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os03g17180.1 PGP20, LOC_Os03g17180 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Len_g04845 PGP20 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Len_g12068 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47394 PGP2 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g27273 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
MA_14136g0010 PGP20 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Mp2g06270.1 PGP20 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153 PGP11 subfamily ABCB transporter & original description: CDS=261-4235 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646 PGP20 subfamily ABCB transporter & original description: CDS=24-3872 0.05 OrthoFinder output from all 47 species
Sam_g25355 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Smo139408 PGP20 Solute transport.primary active transport.ABC... 0.05 OrthoFinder output from all 47 species
Solyc04g010310.4.1 PGP20, Solyc04g010310 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Zm00001e001258_P003 PGP20, Zm00001e001258 subfamily ABCB transporter 0.07 OrthoFinder output from all 47 species
Zm00001e018488_P001 PGP20, Zm00001e018488 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 827 1091
IPR011527 ABC1_TM_dom 81 352
IPR003439 ABC_transporter-like_ATP-bd 423 568
IPR003439 ABC_transporter-like_ATP-bd 1163 1311
No external refs found!