1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_18258

Gb_18258


Description : 3-dehydrosphinganine reductase TSC10B OS=Arabidopsis thaliana (sp|f4jzn6|tc10b_arath : 116.0) & Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor(50.1.1 : 41.7)


Gene families : OG0000323 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18258

Target Alias Description ECC score Gene Family Method Actions
Adi_g082554 HSD1, ATHSD1 EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Aop_g01710 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20431 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Aop_g28314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01080 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.04 OrthoFinder output from all 47 species
Dcu_g01168 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Dcu_g09776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g00767 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR002347 SDR_fam 55 195
No external refs found!