Gb_18150 (PGP13)

Aliases : PGP13

Description : auxin efflux transporter (ABCB19). subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_18150

Target	Alias	Description	ECC score	Gene Family Method
AT3G28860	ABCB19,...	ATP binding cassette subfamily B19	0.03	OrthoFinder output from all 47 species
AT4G18050	PGP9	P-glycoprotein 9	0.03	OrthoFinder output from all 47 species
AT4G25960	PGP2	P-glycoprotein 2	0.02	OrthoFinder output from all 47 species
Adi_g002454	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g010452	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060981	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g25151	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g32929	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene35826.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46501.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene52651.t1	PGP2, Aspi01Gene52651	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g07645	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.06G076400.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000293.10	PGP11	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Dcu_g33169	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g44934	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01033645001	PGP1, ABCB1, ATPGP1	Solute transport.primary active transport.ABC...	0.06	OrthoFinder output from all 47 species
Gb_07563	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_33057	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_33058	ABCB19,...	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Len_g14182	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g02910.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp7g04390.1	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Msp_g01686	PGP6	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03862	ABCB19,...	subfamily ABCB transporter & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g37290	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43029	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09820	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Smo169182	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc02g087870.3.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc06g009280.1.1	PGP11, Solyc06g009280	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc09g008240.3.1	PGP1, ABCB1,...	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Solyc11g067300.2.1	PGP11, Solyc11g067300	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc12g098840.3.1	PGP11, Solyc12g098840	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Spa_g06203	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g19381	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g21974	ABCB19,...	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g08541	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e001258_P003	PGP20, Zm00001e001258	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e014797_P002	Zm00001e014797	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e020073_P001	ATPGP4, PGP4,...	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Zm00001e038462_P002	PGP20, Zm00001e038462	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	78	350
IPR011527	ABC1_TM_dom	722	994
IPR003439	ABC_transporter-like_ATP-bd	423	568
IPR003439	ABC_transporter-like_ATP-bd	1062	1210

External Links

No external refs found!

Gb_18150 (PGP13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation