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  5. Gb_13962

Gb_13962


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 256.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13962
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Adi_g016985 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020884 ORF120 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g029938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g070583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103653 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20613 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g21124 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24631 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g24714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24902 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g26449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g26988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g33464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g35133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g35410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g35523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g40244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g41447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g41986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47984 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48667 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g48749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g49544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17181 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g30910 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g61847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17595.t1 Aspi01Gene17595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22968.t1 Aspi01Gene22968 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33527.t1 Aspi01Gene33527 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59054.t1 ORF120, Aspi01Gene59054 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63791.t1 Aspi01Gene63791 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72777.t1 Aspi01Gene72777 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20016 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g21875 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g38266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g48953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g31363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35994 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40272 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g46700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51742 ORF120 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_02052 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_04010 ORF170 Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_05294 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_08105 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_08402 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_19105 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_22057 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_23548 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_26132 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_27945 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_28242 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_28316 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 OrthoFinder output from all 47 species
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_30314 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_30542 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_33583 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_35549 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_38136 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_40384 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_41335 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 OrthoFinder output from all 47 species
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Lfl_g34363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06981 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06390 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c24_5020V3.1 Pp3c24_5020 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c26_1660V3.1 Pp3c26_1660 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c5_24700V3.1 Pp3c5_24700 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g02649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09374 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g38070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42865 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g11194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54559 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g23827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 36 152
No external refs found!