- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : CPS, ATCPS1, ABC33, CPS1, GA1
Description : Alpha-bisabolene synthase OS=Abies grandis (sp|o81086|tpsd1_abigr : 352.0)
Gene families : OG0006488 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006488_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_13713 | |
| Cluster | HCCA: Cluster_72 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00003p00256250 | evm_27.TU.AmTr_v1... | Santalene and bergamotene synthase, chloroplastic... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g21648 | CPS, ATCPS1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Gb_12468 | TPS02 | mono-/sesquiterpene-/diterpene synthase | 0.03 | OrthoFinder output from all 47 species | |
| Gb_17941 | CPS, ATCPS1,... | Alpha-bisabolene synthase OS=Abies grandis... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os12g30800.1 | KS, KS1, ATKS1,... | Ent-sandaracopimara-8(14),15-diene synthase OS=Oryza... | 0.03 | OrthoFinder output from all 47 species | |
| MA_152325g0010 | KS, KS1, ATKS1, ATKS, GA2 | Alpha-bisabolene synthase OS=Abies grandis... | 0.04 | OrthoFinder output from all 47 species | |
| MA_34273g0020 | CPS, ATCPS1,... | Alpha-bisabolene synthase OS=Abies grandis... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g31705 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g31801 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g34951 | CPS, ATCPS1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g36956 | CPS, ATCPS1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g19537 | CPS, ATCPS1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc08g005635.1.1 | KS, KS1, ATKS1,... | Beta-phellandrene synthase... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0010333 | terpene synthase activity | IEA | Interproscan |
| MF | GO:0016829 | lyase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| MF | GO:0015267 | channel activity | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0055085 | transmembrane transport | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001906 | Terpene_synth_N | 229 | 319 |
| No external refs found! |