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  5. Gb_08861

Gb_08861


Description : Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana (sp|o04504|ppr27_arath : 450.0)


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08861
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00111980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09820... 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.04 OrthoFinder output from all 47 species
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.07 OrthoFinder output from all 47 species
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00105070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01031237001 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.07 OrthoFinder output from all 47 species
Gb_26765 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_10483g0010 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.05 OrthoFinder output from all 47 species
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.04 OrthoFinder output from all 47 species
MA_37227g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.05 OrthoFinder output from all 47 species
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc05g051340.3.1 Solyc05g051340 group-II intron mitochondrial splicing factor (MISF26) 0.03 OrthoFinder output from all 47 species
Solyc07g047620.3.1 Solyc07g047620 Pentatricopeptide repeat-containing protein At4g26680,... 0.05 OrthoFinder output from all 47 species
Solyc11g073270.1.1 Solyc11g073270 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 431 480
IPR002885 Pentatricopeptide_repeat 358 407
IPR002885 Pentatricopeptide_repeat 501 547
IPR002885 Pentatricopeptide_repeat 641 690
IPR002885 Pentatricopeptide_repeat 571 620
IPR002885 Pentatricopeptide_repeat 327 354
No external refs found!