Gb_08836

Description : Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica (sp|q0jdm0|c3h27_orysj : 450.0)

Gene families : OG0001970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_08836

Target	Alias	Description	ECC score	Gene Family Method
AT3G27700	No alias	zinc finger (CCCH-type) family protein / RNA recognition...	0.09	OrthoFinder output from all 47 species
Adi_g010440	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.02	OrthoFinder output from all 47 species
Aev_g30703	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.03	OrthoFinder output from all 47 species
Als_g15540	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.04	OrthoFinder output from all 47 species
GSVIVT01032423001	No alias	Zinc finger CCCH domain-containing protein 41...	0.06	OrthoFinder output from all 47 species
Lfl_g10579	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.02	OrthoFinder output from all 47 species
MA_33944g0010	No alias	Zinc finger CCCH domain-containing protein 27 OS=Oryza...	0.03	OrthoFinder output from all 47 species
Ore_g27253	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001638	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.04	OrthoFinder output from all 47 species
Sam_g29691	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.06	OrthoFinder output from all 47 species
Smo437689	No alias	Zinc finger CCCH domain-containing protein 27 OS=Oryza...	0.04	OrthoFinder output from all 47 species
Solyc02g086510.4.1	Solyc02g086510	Zinc finger CCCH domain-containing protein 41...	0.03	OrthoFinder output from all 47 species
Solyc12g035250.3.1	Solyc12g035250	Zinc finger CCCH domain-containing protein 41...	0.03	OrthoFinder output from all 47 species
Tin_g11114	No alias	component *(RBM26) of PAXT nucleoplasmic activation...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	11	72
IPR000504	RRM_dom	633	693

External Links

No external refs found!

Gb_08836

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation