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Gb_08824


Description : PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana (sp|q9lzr8|y5370_arath : 237.0)


Gene families : OG0010647 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010647_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08824
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT5G03700 No alias D-mannose binding lectin protein with Apple-like... 0.02 OrthoFinder output from all 47 species
Aev_g04101 SD2-5 EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
GSVIVT01033786001 No alias PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os11g05240.1 LOC_Os11g05240 PAN domain-containing protein At5g03700 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e024119_P001 Zm00001e024119 PAN domain-containing protein At5g03700 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0048544 recognition of pollen IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003609 Pan_app 372 407
IPR001480 Bulb-type_lectin_dom 92 174
IPR000858 S_locus_glycoprot_dom 261 327
No external refs found!