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Gb_08623


Description : DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana (sp|f4hyj7|dexh3_arath : 1412.0)


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08623
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g057149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.04 OrthoFinder output from all 47 species
Cre12.g492450 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g44577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008365001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_10437209g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Msp_g36064 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437743 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc03g118920.3.1 Solyc03g118920 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 925 1006
IPR001650 Helicase_C 574 705
IPR014720 dsRBD_dom 1105 1164
IPR007502 Helicase-assoc_dom 769 857
IPR011545 DEAD/DEAH_box_helicase_dom 319 469
No external refs found!