Gb_08095

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 145.0)

Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_08095

Target	Alias	Description	ECC score	Gene Family Method
Gb_00777	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_04010	ORF170	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species
Gb_13320	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_14301	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	OrthoFinder output from all 47 species
Gb_16799	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_25323	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Gb_27945	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Gb_28242	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species
Gb_33414	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_33583	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Gb_37606	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_37775	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species
Gb_39221	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species
Pp3c23_7880V3.1	Pp3c23_7880	No annotation	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	HCCA
BP	GO:0015936	coenzyme A metabolic process	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	66	166
IPR025724	GAG-pre-integrase_dom	5	52

External Links

No external refs found!

Gb_08095

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation