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  5. Gb_05411

Gb_05411


Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana (sp|f4i9q5|dexh7_arath : 1367.0)


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05411
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00006p00184140 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.05 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0449.g070725 No alias not classified & original description: CDS=208-3285 0.03 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.07 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000786.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021094.26 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre06.g266416 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dcu_g19268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15250 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01023271001 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.06 OrthoFinder output from all 47 species
LOC_Os01g02884.1 LOC_Os01g02884 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429367g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.05 OrthoFinder output from all 47 species
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.07 OrthoFinder output from all 47 species
Ore_g20169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43492 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_19726V3.1 Pp3c17_19726 RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g14536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024829 No alias not classified & original description: CDS=1-315 0.03 OrthoFinder output from all 47 species
Smo177444 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc01g006710.4.1 Solyc01g006710 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.06 OrthoFinder output from all 47 species
Spa_g47720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 959 1091
IPR007502 Helicase-assoc_dom 1156 1258
IPR011545 DEAD/DEAH_box_helicase_dom 681 839
IPR011709 DEAD-box_helicase_OB_fold 1344 1441
No external refs found!