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  5. Gb_05084

Gb_05084


Description : no hits & (original description: none)


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05084
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.07 OrthoFinder output from all 47 species
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 OrthoFinder output from all 47 species
AT4G24200 No alias Transcription elongation factor (TFIIS) family protein 0.03 OrthoFinder output from all 47 species
Aev_g46582 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Aev_g47750 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Ala_g20600 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ala_g37018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03624 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Aob_g17691 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Aop_g05279 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Azfi_s0100.g044240 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Azfi_s0124.g048462 No alias not classified & original description: CDS=36-3404 0.04 OrthoFinder output from all 47 species
Ceric.02G029300.1 Ceric.02G029300 not classified & original description: pacid=50584188... 0.07 OrthoFinder output from all 47 species
Ceric.16G046100.1 Ceric.16G046100 not classified & original description: pacid=50589203... 0.03 OrthoFinder output from all 47 species
Ceric.1Z243700.1 Ceric.1Z243700 not classified & original description: pacid=50567873... 0.02 OrthoFinder output from all 47 species
Ceric.24G078000.1 Ceric.24G078000 regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.1 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g09005 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g24371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007806001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01009936001 No alias No description available 0.1 OrthoFinder output from all 47 species
GSVIVT01024041001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01032521001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g11454 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g11979 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
MA_10428034g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10432920g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_39143g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_39143g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_710118g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g16160.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g16230.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g15696 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g01867 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g16149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25799 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Pir_g13634 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018052 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Sam_g04139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29218 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Smo440870 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g114060.3.1 Solyc03g114060 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc06g071350.4.1 Solyc06g071350 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc12g089320.3.1 Solyc12g089320 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Tin_g13967 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e002441_P003 Zm00001e002441 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e013353_P001 Zm00001e013353 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e037792_P001 Zm00001e037792 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e037793_P001 Zm00001e037793 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 169 218
No external refs found!