1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_04906

Gb_04906 (VCS)


Aliases : VCS

Description : scaffold component VCS of mRNA decapping complex


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04906

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.14 OrthoFinder output from all 47 species
Adi_g055830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Adi_g071661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04893 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Ala_g11471 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Ala_g13274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Als_g63425 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Aob_g03608 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Aop_g07559 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Aop_g08777 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030776 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ceric.06G068900.1 VCS, Ceric.06G068900 scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ceric.33G025800.1 VCS, Ceric.33G025800 scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.27 VCS Varicose-related protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g32341 VCS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g11716 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.08 OrthoFinder output from all 47 species
Dde_g10360 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01006976001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.11 OrthoFinder output from all 47 species
LOC_Os02g49090.1 VCS, LOC_Os02g49090 scaffold component VCS of mRNA decapping complex 0.07 OrthoFinder output from all 47 species
LOC_Os06g19660.1 VCS, LOC_Os06g19660 scaffold component VCS of mRNA decapping complex 0.08 OrthoFinder output from all 47 species
Len_g08328 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Len_g25353 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Lfl_g18274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.08 OrthoFinder output from all 47 species
MA_10427487g0020 VCS Varicose-related protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10431534g0010 VCR Varicose-related protein OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_10431534g0020 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
MA_10431534g0030 VCS scaffold component VCS of mRNA decapping complex 0.07 OrthoFinder output from all 47 species
MA_39123g0010 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g11710.1 VCS scaffold component VCS of mRNA decapping complex 0.05 OrthoFinder output from all 47 species
Msp_g14526 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Msp_g26178 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Nbi_g01496 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Ore_g09332 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.07 OrthoFinder output from all 47 species
Ore_g36602 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Pir_g37089 VCS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g03283 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g10110 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.04 OrthoFinder output from all 47 species
Sam_g16345 No alias scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Solyc07g065950.4.1 VCS, Solyc07g065950 scaffold component VCS of mRNA decapping complex 0.04 OrthoFinder output from all 47 species
Solyc10g005920.4.1 VCS, Solyc10g005920 scaffold component VCS of mRNA decapping complex 0.08 OrthoFinder output from all 47 species
Spa_g07074 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Spa_g10517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08563 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e015689_P001 VCS, Zm00001e015689 scaffold component VCS of mRNA decapping complex 0.09 OrthoFinder output from all 47 species
Zm00001e023399_P003 VCS, Zm00001e023399 scaffold component VCS of mRNA decapping complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 252 569
No external refs found!