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  5. Gb_04218

Gb_04218 (SEU)


Aliases : SEU

Description : Transcriptional corepressor SEUSS OS=Arabidopsis thaliana (sp|q8w234|seuss_arath : 284.0)


Gene families : OG0000747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00119460 SLK2,... Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00071p00041100 SEU,... Transcriptional corepressor SEUSS OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G43850 SEU SEUSS transcriptional co-regulator 0.06 OrthoFinder output from all 47 species
AT4G25515 SLK3 SEUSS-like 3 0.04 OrthoFinder output from all 47 species
Adi_g016540 SEU adapter component *(SEU/SLK) of transcriptional... 0.07 OrthoFinder output from all 47 species
Adi_g042651 SEU adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Adi_g106397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07332 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Ala_g02698 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Aop_g21250 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Aspi01Gene51629.t1 SEU, Aspi01Gene51629 adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026282 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Ehy_g23719 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
GSVIVT01010013001 SEU Transcriptional corepressor SEUSS OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01010616001 SLK2 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os11g10060.1 SEU, LOC_Os11g10060 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os11g10070.1 SEU, LOC_Os11g10070 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g05019 SEU adapter component *(SEU/SLK) of transcriptional... 0.05 OrthoFinder output from all 47 species
MA_12796g0010 SEU Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_208023g0010 SLK2 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g15709 SEU adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Ore_g42762 SEU adapter component *(SEU/SLK) of transcriptional... 0.01 OrthoFinder output from all 47 species
Pir_g13626 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Pp3c16_1990V3.1 SEU, Pp3c16_1990 SEUSS transcriptional co-regulator 0.01 OrthoFinder output from all 47 species
Ppi_g04706 SEU adapter component *(SEU/SLK) of transcriptional... 0.05 OrthoFinder output from all 47 species
Sam_g25017 No alias adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Solyc03g026190.3.1 SLK2, Solyc03g026190 Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc06g059750.3.1 SEU, Solyc06g059750 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Solyc06g059760.3.1 SEU, Solyc06g059760 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Tin_g20497 SEU adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Zm00001e021381_P001 SEU, Zm00001e021381 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e029868_P001 SLK2, Zm00001e029868 Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e039584_P001 SEU, Zm00001e039584 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 386 528
No external refs found!