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  5. Gb_04014

Gb_04014


Description : transcription factor (CAMTA)


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04014
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 CAMTA3, SR1,... RNA biosynthesis.transcriptional activation.CAMTA... 0.02 OrthoFinder output from all 47 species
AT2G22300 CAMTA3, SR1 signal responsive 1 0.03 OrthoFinder output from all 47 species
AT5G09410 EICBP.B, CAMTA1 ethylene induced calmodulin binding protein 0.02 OrthoFinder output from all 47 species
Aev_g01603 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene51851.t1 Aspi01Gene51851 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69876.t1 Aspi01Gene69876 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.12G055700.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.31G019600.1 Ceric.31G019600 CAMTA-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01004860001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.05 OrthoFinder output from all 47 species
LOC_Os01g69910.1 LOC_Os01g69910 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
LOC_Os03g09100.1 CAMTA3, SR1,... transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
LOC_Os03g27080.1 CAMTA3, SR1,... transcription factor (CAMTA) 0.06 OrthoFinder output from all 47 species
LOC_Os04g31900.1 LOC_Os04g31900 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Lfl_g34966 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp7g03150.1 CAMTA3, SR1 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010659 No alias CAMTA-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013495 No alias CAMTA-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Tin_g21019 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012888_P005 CAMTA3, SR1,... transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 1007 1025
IPR000048 IQ_motif_EF-hand-BS 1030 1049
IPR005559 CG-1_dom 20 132
IPR020683 DUF3447 796 885
IPR002909 IPT_dom 588 670
No external refs found!