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  5. Gb_02741

Gb_02741


Description : large subunit gamma of AP-1 trans-Golgi network cargo adaptor complex


Gene families : OG0002603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02741

Target Alias Description ECC score Gene Family Method Actions
AT1G23900 GAMMA-ADAPTIN 1,... gamma-adaptin 1 0.05 OrthoFinder output from all 47 species
AT1G60070 No alias Adaptor protein complex AP-1, gamma subunit 0.07 OrthoFinder output from all 47 species
Adi_g008187 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Aev_g07309 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Ala_g14098 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 OrthoFinder output from all 47 species
Als_g14323 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.1 OrthoFinder output from all 47 species
Aob_g02329 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Aop_g01386 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007847 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Cba_g15244 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ceric.1Z105200.1 Ceric.1Z105200 large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Ceric.37G015500.1 GAMMA-ADAPTIN 1,... not classified & original description: pacid=50616075... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.33 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Cre16.g676650 GAMMA-ADAPTIN 1,... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Dcu_g01942 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.11 OrthoFinder output from all 47 species
Ehy_g08600 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
GSVIVT01020209001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.1 OrthoFinder output from all 47 species
LOC_Os02g56110.1 LOC_Os02g56110 large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
LOC_Os06g07090.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.1 OrthoFinder output from all 47 species
Len_g40020 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 OrthoFinder output from all 47 species
Lfl_g22120 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
MA_10432717g0010 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
MA_675g0010 No alias AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g02140.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.16 OrthoFinder output from all 47 species
Msp_g09172 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 OrthoFinder output from all 47 species
Nbi_g04417 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.08 OrthoFinder output from all 47 species
Ore_g15695 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Pir_g10906 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Ppi_g14572 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020158 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Smo168054 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Smo233268 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Solyc04g025870.4.1 Solyc04g025870 large subunit gamma of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species
Solyc05g005780.3.1 Solyc05g005780 large subunit gamma of AP-1 trans-Golgi network cargo... 0.13 OrthoFinder output from all 47 species
Spa_g55808 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Tin_g02865 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Zm00001e023661_P002 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 OrthoFinder output from all 47 species
Zm00001e030101_P002 Zm00001e030101 large subunit gamma of AP-1 trans-Golgi network cargo... 0.14 OrthoFinder output from all 47 species
Zm00001e036396_P001 Zm00001e036396 large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 27 577
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 797 911
No external refs found!