Gb_02251 (RPOB)

Aliases : RPOB

Description : RpoB core component plastid-encoded RNA polymerase

Gene families : OG0005891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005891_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_02251
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108130	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.04	OrthoFinder output from all 47 species
AMTR_s00145p00090170	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.04	OrthoFinder output from all 47 species
AMTR_s00626p00011520	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Morus indica	0.05	OrthoFinder output from all 47 species
AMTR_s01499p00009870	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.04	OrthoFinder output from all 47 species
ATCG00190	RPOB	RNA polymerase subunit beta	0.07	OrthoFinder output from all 47 species
Aev_g18557	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.13	OrthoFinder output from all 47 species
Ceric.02G012900.1	RPOB, Ceric.02G012900	not classified & original description: pacid=50585256...	0.07	OrthoFinder output from all 47 species
Ceric.33G023100.1	RPOB, Ceric.33G023100	not classified & original description: pacid=50607182...	0.09	OrthoFinder output from all 47 species
Ceric.38G009900.1	RPOB, Ceric.38G009900	not classified & original description: pacid=50579505...	0.13	OrthoFinder output from all 47 species
LOC_Os04g16820.1	RPOB, LOC_Os04g16820	RpoB core component plastid-encoded RNA polymerase	0.04	OrthoFinder output from all 47 species
LOC_Os05g22830.1	RPOB, LOC_Os05g22830	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
LOC_Os05g22860.1	RPOB, LOC_Os05g22860	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
Mp1g13170.1	RPOB	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.09	OrthoFinder output from all 47 species
Mp6g01430.1	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Nbi_g14004	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.09	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027472	RPOB	not classified & original description: CDS=1-1728	0.05	OrthoFinder output from all 47 species
Solyc00g500053.1.1	RPOB, Solyc00g500053	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.07	OrthoFinder output from all 47 species
Solyc01g095950.1.1	RPOB, Solyc01g095950	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.07	OrthoFinder output from all 47 species
Solyc02g067590.2.1	RPOB, Solyc02g067590	DNA-directed RNA polymerase subunit beta OS=Liriodendron...	0.05	OrthoFinder output from all 47 species
Solyc10g017920.1.1	RPOB, Solyc10g017920	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	OrthoFinder output from all 47 species
Solyc12g035870.3.1	RPOB, Solyc12g035870	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007641	RNA_pol_Rpb2_7	797	868
IPR007120	DNA-dir_RNAP_su2_dom	397	795
IPR007645	RNA_pol_Rpb2_3	192	260
IPR007642	RNA_pol_Rpb2_2	2	131

External Links

No external refs found!

Gb_02251 (RPOB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation