1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021432.35

Cpa|evm.model.tig00021432.35


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase


Gene families : OG0004754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004754_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021432.35
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00241220 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
AT1G50920 No alias Nucleolar GTP-binding protein 0.11 OrthoFinder output from all 47 species
Adi_g020856 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Aop_g01799 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.01 OrthoFinder output from all 47 species
Ceric.01G116000.1 Ceric.01G116000 regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01025272001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Gb_00431 No alias NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Gb_05997 No alias NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os06g09570.1 LOC_Os06g09570 NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os07g01920.1 LOC_Os07g01920 NOG1 LSU processome regulatory GTPase 0.06 OrthoFinder output from all 47 species
MA_89272g0010 No alias NOG1 LSU processome regulatory GTPase 0.07 OrthoFinder output from all 47 species
Nbi_g11011 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Pir_g05601 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.01 OrthoFinder output from all 47 species
Pp3c23_20710V3.1 Pp3c23_20710 Nucleolar GTP-binding protein 0.03 OrthoFinder output from all 47 species
Ppi_g31063 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Solyc01g081010.4.1 Solyc01g081010 NOG1 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species
Solyc07g053730.4.1 Solyc07g053730 NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Spa_g09142 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Spa_g45312 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Tin_g04665 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Zm00001e030762_P002 Zm00001e030762 NOG1 LSU processome regulatory GTPase 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR012973 NOG_C 395 448
IPR010674 NOG1_Rossman_fold_dom 235 292
No external refs found!