Cpa|evm.model.tig00021357.16

No description available

Gene families : OG0004423 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004423_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021357.16

Target	Alias	Description	ECC score	Gene Family Method
Als_g10910	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05756	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g12075	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene11791.t1	UNE6, Aspi01Gene11791	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0065.g035861	UNE6	pre-mRNA-processing protein *(LUC7) & original...	0.04	OrthoFinder output from all 47 species
Ceric.07G008600.1	UNE6, Ceric.07G008600	pre-mRNA-processing protein *(LUC7) & original...	0.02	OrthoFinder output from all 47 species
Dac_g00719	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g32033	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01019063001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_35816	UNE6	pre-mRNA-processing protein (LUC7)	0.03	OrthoFinder output from all 47 species
LOC_Os02g39300.1	LOC_Os02g39300	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
LOC_Os03g62640.2	LOC_Os03g62640	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Mp7g03530.1	UNE6	pre-mRNA-processing protein (LUC7)	0.03	OrthoFinder output from all 47 species
Ppi_g03747	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014772	UNE6	pre-mRNA-processing protein *(LUC7) & original...	0.01	OrthoFinder output from all 47 species
Sam_g15791	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Smo151152	UNE6	No description available	0.02	OrthoFinder output from all 47 species
Solyc05g056280.2.1	Solyc05g056280	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Zm00001e006322_P004	Zm00001e006322	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Zm00001e011667_P003	Zm00001e011667	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005685	U1 snRNP	IEA	Interproscan
BP	GO:0006376	mRNA splice site selection	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004882	Luc7-rel	2	260

External Links

No external refs found!

Cpa|evm.model.tig00021357.16

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation