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  5. Cpa|evm.model.tig00021135.41

Cpa|evm.model.tig00021135.41


Description : Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021135.41
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00252500 ATRTL2, RTL2,... Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00033p00127000 ATDCL3, DCL3,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.01 OrthoFinder output from all 47 species
Dac_g33201 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
Spa_g10539 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 748 935
IPR001650 Helicase_C 1157 1220
No external refs found!