Cpa|evm.model.tig00021127.181

Description : Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.SRP72 component

Gene families : OG0006069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006069_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021127.181

Target	Alias	Description	ECC score	Gene Family Method
AT1G67680	No alias	SRP72 RNA-binding domain	0.03	OrthoFinder output from all 47 species
Als_g32420	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Aob_g18346	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.01	OrthoFinder output from all 47 species
Azfi_s0617.g079540	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Ceric.1Z034700.1	Ceric.1Z034700	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Cre03.g182500	No alias	Protein translocation.endoplasmic...	0.02	OrthoFinder output from all 47 species
Dcu_g14693	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
GSVIVT01010320001	No alias	Protein translocation.endoplasmic...	0.02	OrthoFinder output from all 47 species
LOC_Os01g66560.1	LOC_Os01g66560	component SRP72 of SRP (signal recognition particle) complex	0.02	OrthoFinder output from all 47 species
Lfl_g11159	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Msp_g01201	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Nbi_g03709	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Ore_g09232	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Pir_g05599	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Sam_g09701	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Smo166386	No alias	Protein translocation.endoplasmic...	0.01	OrthoFinder output from all 47 species
Spa_g12701	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Tin_g04656	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	HCCA
MF	GO:0005047	signal recognition particle binding	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005869	dynactin complex	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031545	SRP_TPR-like	20	148
IPR013699	Signal_recog_part_SRP72_RNA-bd	486	538

External Links

No external refs found!

Cpa|evm.model.tig00021127.181

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation